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https://community.brain-map.org/t/abc-atlas-merfish-cell-segmentation-in-3d/3955

ABC Atlas: MERFISH cell segmentation in 3D

Hi, In the ABC Atlas webinar ( https://www.youtube.com/watch?v=fuqpSZp7uk0) you mentioned that each MERFISH z plane was segmented separately and then combined. How did you match cells when combining? Based on the distan…



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ABC Atlas: MERFISH cell segmentation in 3D

https://community.brain-map.org/t/abc-atlas-merfish-cell-segmentation-in-3d/3955

Hi, In the ABC Atlas webinar ( https://www.youtube.com/watch?v=fuqpSZp7uk0) you mentioned that each MERFISH z plane was segmented separately and then combined. How did you match cells when combining? Based on the distan…



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https://community.brain-map.org/t/abc-atlas-merfish-cell-segmentation-in-3d/3955

ABC Atlas: MERFISH cell segmentation in 3D

Hi, In the ABC Atlas webinar ( https://www.youtube.com/watch?v=fuqpSZp7uk0) you mentioned that each MERFISH z plane was segmented separately and then combined. How did you match cells when combining? Based on the distan…

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      Hi, In the ABC Atlas webinar ( https://www.youtube.com/watch?v=fuqpSZp7uk0) you mentioned that each MERFISH z plane was segmented separately and then combined. How did you match cells when combining? Based on the distan…
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      ABC Atlas: MERFISH cell segmentation in 3D
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      Hi, In the ABC Atlas webinar ( https://www.youtube.com/watch?v=fuqpSZp7uk0) you mentioned that each MERFISH z plane was segmented separately and then combined. How did you match cells when combining? Based on the distance of the cell centroid? Much appreciated! Simon

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